Skip to content

Sequence Gazing

Exploring evolutionary patterns in data

Primary menu

  • Welcome
  • About
  • Posts
  • Glossary
  • Resources
  • Art
Twitter GitHub LinkedIn

Category: Bioinformatics

By Mili / Posted onSeptember 28, 2025

What is a k-mer?

A k-mer is a substring of a biological sequence with length K, where K can be any number. If you Continue Reading …

By Mili / Posted onJuly 31, 2025

The Neighbour-Joining algorithm: Ties and Matrix Order

Following on from the previous post Foundations of phylogenetics we’ll next explore how ties and matrix order can influence the Continue Reading …

By Mili / Posted onJune 27, 2025

Foundations of phylogenetics

For many years it was believed that patterns of evolution are tree-like and sometimes they are! We now know that Continue Reading …

By Mili / Posted onJune 22, 2025

Clustering to Reveal Hidden Traits: Using Neighbour-Joining Trees

Before we dive into the theory behind the Neighbour-Joining algorithm I wanted to do a simple conceptual exercise to highlight Continue Reading …

By Mili / Posted onJanuary 19, 2025

Building and running a Docker container

In this post we’ll go through how to build and run a docker container! For our example we will use Continue Reading …

By Mili / Posted onJanuary 19, 2025

Containerisation for research software

Containerisation is the process of packaging software with its dependencies (eg. tools, libraries, configurations) into a container. Using containerisation improves Continue Reading …

By Mili / Posted onDecember 31, 2024

Using alignment viewers: An Introduction with Aliview

When we are working on individual genes or proteins, or we just want to take a closer look at sequences, Continue Reading …

By Mili / Posted onNovember 20, 2024

Getting started with population analysis in R

A population is another word for a group of individuals. For population studies we often want to analyse groups of Continue Reading …

By Mili / Posted onOctober 31, 2024

Introduction to sequence analysis in R

In this post we will look at how to read, write and analyse fasta sequences in R using the ape, Continue Reading …

By Mili / Posted onAugust 31, 2024

Locating Epitopes Using Python

What are Epitopes? Epitopes are regions of a protein that can be recognised by an antibody or immune cells and Continue Reading …

Post navigation

← Older posts

Recent Posts

  • What is a k-mer?
  • Coalescent trees and Bugs in a box
  • The Neighbour-Joining algorithm: Ties and Matrix Order
  • Foundations of phylogenetics
  • Clustering to Reveal Hidden Traits: Using Neighbour-Joining Trees

Categories

  • Academic writing
  • Bioinformatics
  • Collaboration & Software Development
  • Conferences
  • Genetics
  • Linux
  • Miscellaneous
  • Phylogenetics
  • Python
  • R

Archives

  • September 2025
  • August 2025
  • July 2025
  • June 2025
  • May 2025
  • April 2025
  • March 2025
  • February 2025
  • January 2025
  • December 2024
  • November 2024
  • October 2024
  • September 2024
  • August 2024
  • July 2024
  • June 2024
  • May 2024
  • April 2024
  • March 2024
  • February 2024
  • January 2024
  • December 2023
  • November 2023
  • October 2023
  • September 2023
  • August 2023
  • July 2023
  • June 2023
  • May 2023
  • April 2023
  • March 2023
  • February 2023
  • January 2023
  • December 2022
  • November 2022
  • October 2022
  • September 2022
  • August 2022
  • July 2022
  • June 2022
  • May 2022
  • February 2022
  • January 2022

Footer menu

  • Privacy policy
Twitter GitHub LinkedIn
Copyright © 2025 Sequence Gazing. All Rights Reserved. Privacy policy
Theme: Higher Education
Scroll Up Top